Protein ZmHMG13
ZmHMG13 is a protein in the HMG family.
Information
Coreg Name: ZmHMG13
Species: Maize
Coreg Family: HMG
Gene Name(Synonym): HMG13
Uniprot ID: O04418
Subgenome: 1

Protein ZmHMG13

ZmHMG13 is a protein in the HMG family.

Overview of domains present in v5 transcripts
PF00505PF09011
Zm00001eb320870_T001
Zm00001eb320870_T002
Zm00001eb320870_T003

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs


Gene IDTypeMEME LogoSequenceFIMOPosition
Zm00001d021433DAPseq no logo sequence fimo position
Zm00001d021433DAPseq no logo sequence fimo position
Zm00001d021433ChIPseq no logo sequence fimo position
Zm00001d021433PChIPseq no logo sequence fimo position

Interactions where ZmHMG13 is the regulator


There are no protein-dna interactions that fit this criteria.

Interactions where ZmHMG13 is the target  
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There are 58 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb320870_T001 from maize genome v5

Amino Acid Sequence
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MKSRARSTAGDSRLSVRKTKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDKWKSLSDAEKAPYVS
KAEKLKAEYTKKIDAYNNKQSGDPTASGDSDKSKSEVNDEDEEGDE

MKSRARSTAGDSRLSVRKTKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDKWKSLSDAEKAPYVS
KAEKLKAEYTKKIDAYNNKQSGDPTASGDSDKSKSEVNDEDEEGDE

MKSRARSTAGDSRLSVRKTKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDKWKSLSDAEKAPYVS
KAEKLKAEYTKKIDAYNNKQSGDPTASGDSDKSKSEVNDEDEEGDE

MKSRARSTAGDSRLSVRKTKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDKWKSLSDAEKAPYVS
KAEKLKAEYTKKIDAYNNKQSGDPTASGDSDKSKSEVNDEDEEGDE

MKSRARSTAGDSRLSVRKTKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDKWKSLSDAEKAPYVS
KAEKLKAEYTKKIDAYNNKQSGDPTASGDSDKSKSEVNDEDEEGDE

MKSRARSTAGDSRLSVRKTKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDKWKSLSDAEKAPYVS
KAEKLKAEYTKKIDAYNNKQSGDPTASGDSDKSKSEVNDEDEEGDE

Secondary Structure Color Code
BEND region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P left-handed polyproline helix
HELX_RH_3T_P right-handed 3-10 helix
HELX_RH_AL_P right-handed alpha helix
HELX_RH_PI_P right-handed pi helix
STRN beta strand
TURN_TY1_P type I turn
UNDETERMINED no data available
Domains Present
PF09011
PF00505
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Nucleotide Sequence
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CGCGCGGCCAATGGGAGGCGAGTGG...

GRMZM2G066528_T01 from maize genome v3

Amino Acid Sequence
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MKSRARSTAGDSRLSVRKTKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDKWKSLSDAEKAPYVS
KAEKLKAEYTKKIDAYNNKQVHLETPRRLVIPTSPSPR

Nucleotide Sequence
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ACCGCCCCTTACTTTAAAAGCCGCC...

GRMZM2G066528_T02 from maize genome v3


Related TFome: pUT5328

Amino Acid Sequence
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MKSRARSTAGDSRLSVRKTKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDKWKSLSDAEKAPYVS
KAEKLKAEYTKKIDAYNNKQSGDPTASGDSDKSKSEVNDEDEEGDE

Nucleotide Sequence
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ACCGCCCCTTACTTTAAAAGCCGCC...

GRMZM2G066528_T03 from maize genome v3

Amino Acid Sequence
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MKSRARSTAGDSRLSVRKTKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDKWKSLSDAEKAPYVS
KAEKLKAEYTKKIDAYNNKQVHLETPRRLVIPTSPSPRVTSDV

Nucleotide Sequence
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ACCGCCCCTTACTTTAAAAGCCGCC...

GRMZM2G066528_T04 from maize genome v3

Amino Acid Sequence
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MKSRARSTAGDSRLSVRKTKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDKWKSLSDAEKAPYVS
KAEKLKAEYTKKIDAYNNKQSGDPTASGDSDKSKSEGDE

Nucleotide Sequence
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ACCGCCCCTTACTTTAAAAGCCGCC...

GRMZM2G066528_T05 from maize genome v3

Amino Acid Sequence
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MTDETLSKCLQSGKKIFVVVGLTGLSRRTF

Nucleotide Sequence
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ATGATTTCGTCATTCGATTCGAATA...

Zm00001d021433_T001 from maize genome v4

Amino Acid Sequence
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MKSRARSTAGDSRLSVRKTKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDKWKSLSDAEKAPYVS
KAEKLKAEYTKKIDAYNNKQSGDPTASGDSDKSKSEVNDEDEEGDE

Nucleotide Sequence
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GAATTAGATGATGCGTTATGGGTTG...

Zm00001d021433_T002 from maize genome v4

Amino Acid Sequence
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MKSRARSTAGDSRLSVRKTKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDKWKSLSDAVSLFVPQ
SHFNRLSPQLVAVATLQMQEKAPYVSKAEKLKAEYTKKIDAYNNKQSGDPTASGDSDKSKSEVNDEDEEGDE

Nucleotide Sequence
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CACTCGCATCAGAGCGGCGCCGGCC...

Zm00001d021433_T003 from maize genome v4

Amino Acid Sequence
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MKSRARSTAGDSRLSVRKTKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDKWKSLSDAEKAPYVS
KAEKLKAEYTKKIDAYNNKQSGDPTASGDSDKSKSEVNDEDEEGDE

Nucleotide Sequence
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CACTCGCATCAGAGCGGCGCCGGCC...

Zm00001d021433_T004 from maize genome v4

Amino Acid Sequence
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MKSRARSTAGDSRLSVRKTKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDKWKSLSDAEKAPYVS
KAEKLKAEYTKKIDAYNNKQSGDPTASGDSDKSKSEVNDEG

Nucleotide Sequence
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ACTCGCATCAGAGCGGCGCCGGCCT...

Zm00001d021433_T005 from maize genome v4

Amino Acid Sequence
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MKSRARSTAGDSRLSVRKTKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDKWKSLSDAEKAPYVS
KAEKLKAEYTKKIDAYNNKQSGDPTASGDSDKSKSEVNDEDEEGDE

Nucleotide Sequence
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AGAGCGGCGCCGGCCTACAACCGTT...

Zm00001d021433_T006 from maize genome v4

Amino Acid Sequence
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MKSRARSTAGDSRLSVRKTKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDKWKSLSDAEKAPYVS
KAEKLKAEYTKKIDAYNNKQSGDPTASGDSDKSKSEGDE

Nucleotide Sequence
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CACTCGCATCAGAGCGGCGCCGGCC...

Zm00001d021433_T007 from maize genome v4

Amino Acid Sequence
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MKSRARSTAGDSRYDSIWPPLSTILVFLFVVLNWICLFFLKALGEEDQGREGPKQAQEASERVLRLHGGVQEGLQGEAPQ
CEASLRDWQGWW

Nucleotide Sequence
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ATCAGAGCGGCGCCGGCCTACAACC...

Zm00001d021433_T008 from maize genome v4

Amino Acid Sequence
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MKSRARSTAGDSRLVVTSGSPCLMPRRLPTCLRQRSSRLSTPRRSTLTTTSSLETPRRLVIPTSPSPR

Nucleotide Sequence
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ACTCGCATCAGAGCGGCGCCGGCCT...

Zm00001eb320870_T002 from maize genome v5

Amino Acid Sequence
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MKSRARSTAGDSRLSVRKTKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDKWKSLSDAEKAPYVS
KAEKLKAEYTKKIDAYNNKQSGDPTASGDSDKSKSEGDE

Nucleotide Sequence
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CGCGCGGCCAATGGGAGGCGAGTGG...

Zm00001eb320870_T003 from maize genome v5

Amino Acid Sequence
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MKSRARSTAGDSRLSVRKTKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDKWKSLSDAEKAPYVS
KAEKLKAEYTKKIDAYNNKQVHLETPRRLVIPTSPSPRVTSDV

Nucleotide Sequence
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CTCCACTCGCATCAGAGCGGCGCCG...


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